Those, along with scrolling, are on the ToDo list ^.^
It seems I have misunderstood what shift-click support is supposed to do, as you're not the first person to mention it. I was under the impression you wanted the ability to hold shift, then click the crafting result and it would craft as many as possible, up to a full stack of the resulting item. That I added some time ago, however it either isn't working properly, or I have misunderstood the feature request.
This one is a good bit more tricky, I wanted to include it in the initial release, but to be frank, I just couldn't figure out all the GL code and Thaumcraft calls to pull this one off. It too remains on the ToDo list.