Personally, I keep all of my stuff in a folder. Either a shortcut or the actual thing is used.
I keep my SMP folder in a Dropbox folder, so that I will have my world backed up when it's saved. I also distribute a folder within it to OPs via shared folder, used for keeping track of bans, kicks, ideas, etc.
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Quote from videofreak »
Hosting images on MediaFire? Are you high on cat urine?
I have two folders. The backup folder. Where I keep all the minecraft stuff for the game and server.
Then the MineCraft folder with subfolders for the stuff I am actually using. Which is currently the GPS , Bukkit, 2 servers that I play with my family on , and the level.dat files. With some other stuff thrown in too.