Ok so I made a normal server with pixelmon and it worked fine, but the bukkit minecraft_server.jar thing is different. Can someone give me a detailed explanation on how to get pixelmon on a bukkit server please? Thanks, I'm sorry that I'm such a noob xD
I'll be making a tutorial on how to do that on my Forge modding tutorials. Link will be here.
http://www.minecraftforum.net/topic/1736416-15-creating-mods-extradrops-forge-source/